Top 20 NuGet bioinformatics Packages
TMEA (Thermodynamically Motivated Enrichment Analysis) is a thermodynamically motivated approach to gene set enrichment analysis
Statistical functions with a clear biological focus such as Gene Set Enrichment Analysis (GSEA)
Data visualization for bioinformatic purposes, containing for instance Venn and Chord diagramms
Make your workflow ML ready with BioFSharp.ML. Currently contains helper functionf for CNTK and a pre-trained model we used in our publication about predicting peptide observability.
BioFSharp.BioContainers gives you the possibility to leverage containerized applications without leaving you F# environment. We build on the fondation of Docker.DotNet to programmatically access the the REST API on top of the docker daemon. We provide special functions to use with biocontainers, whi...
BioFSharp.IO contains read/write functions for a diverse set of biological file formats such as Fasta, FastQ, GeneBank or GFF, as well as helper function for searching on or transforming the input data
BioFSharp aims to be a user-friendly library for Bioinformatics written in F#. This is the core package that contains optimized biological datastructures (For example aminoacdis, nucleotides, and sequences consisting of them) and core bioinformatic algorithms (such as alignments or pattern search). ...
Web Service Framework for.NET Bio to utilize common bioinformatic web services on the Internet including BLAST and ClustalW.
Parallel Sequence Alignment (PAMSAM) and Parallel DeNovo Assembler (PaDena) support for .NET Bio
.NET Bio is an open source bioinformatics/genomics library for .NET, WinRT, WinPRT and Xamarin that is designed to enable simple loading, saving and analysis of biological data. It includes several common parsers as well as a variety of algorithms for pairwise/multiple alignment and assembly operati...
The common database reader includes: NCBI genbank reader NCBI gff/PTT feature sites document reader KEGG DBGET/LinkDB/BriteText/SSDB rest API MetaCyc database parser Common Fasta sequence database I/O DOOR database reader etc.
.NET Bio is an open source bioinformatics/genomics library for .NET Standard 2.0 that is designed to enable simple loading, saving and analysis of biological data. It includes several common parsers as well as a variety of algorithms for pairwise/multiple alignment and assembly operations.
This library provides the NCBI blast+ output parser and some data analysis API, like SBH, BBH, venn diagram analysis. This package also provides a batch schedule extension for the large scale localblast alignment parallel task in multiple localblast process. project source code can be download from ...